miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|160962696|gb|EY455641.1|EY455641 CTAAATTTGGCCACAGACCTGGATATCGGAGTGTACAATGTGGTCCTGAGGGTCGCAGACAACCAGGGCCTGTCGCAGGA
CAACACCGTCCAGACCAAAGTGTGTGACTGCACTGGCACAGACGTGTCCTGCCAAGGGCGGATTGCAGGTGGCACCAGCC
TGCCCATGATTCTGGGAATACTGGGAGGCATCCTGTTGCTGCTCATGCTGGTGCTGCTGCTGCTGCTGTTTGCGAGACGA
AGAGGAGGAGAAAAGAAGGAGCCTCTGCTGCAGGACGACGATATCAGAGACAACATCTACTACTATGACGAAGAGGGAGG
CGGCGAGGACGATCAGGACTATGACCTGAGTGTTCTCCACCGTGGTCTGGACAACCGGCCCGACGTGTTCAGGAACGACG
TGTTGCCCAACTTCATGCCGGCTCCTCAGTACCGGCCTCGTCCCGCCAATCCAGACGAGATCGGCAACTTCATCGATGAT
AACCTGAAGGCAGCCGACAACGACCCGACAGCGCCCCCCTACGACTCCCTGCTGGTGTTCGACTACGAGGGCGGCGGCTC
CGACGCAGCAGCCTCTCCTCTCTGAACTCGTCGAGCAGCGGGGACCAGACTACGACTGCCTCGGCGACTGGGGACCCCGC
TTCAAGAAACTGGCGACATGTACGGCGGCGGCGAGACGACGACATGCTGTAAACGTAC




Most similar to sp|P08641|CADH1_CHICK

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|P08641|CADH1_CHICK Cadherin-1 OS=Gallus gallus GN=CDH1 PE=1 SV=2
          Length = 887

 Score =  169 bits (427), Expect = 2e-41
 Identities = 97/229 (42%), Positives = 120/229 (52%), Gaps = 4/229 (1%)
 Frame = +1

Query: 1    LNLATDLDIGVYNVVLRVADNQGLSQDNTVQTKVCDCTGTDVSCQGR--IAGGTSXXXXX 174
            + L  +L+ G YN+ +++ D+QG +Q   V+ +VC+C GT  +C+ R  I GG       
Sbjct: 656  MGLKKELEPGEYNIFVKLTDSQGKAQVTQVKAQVCECEGTAKNCERRSYIVGGLGVPAIL 715

Query: 175  XXXXXXXXXXXXXXXXXXFARRRGGEKKEPLLQXXXXXXXXXXXXXXXXXXXXXXXXLSV 354
                              FARRR  EK+  L                          LS 
Sbjct: 716  GILGGILALLILLLLLLLFARRRKVEKEPLLPPEDDMRDNVYNYDEEGGGEEDQDYDLSQ 775

Query: 355  LHRGLDNRPDVFRNDVLPNFMPAPQYRPRPANPDEIGNFIDDNLKAADNDPTAPPYDSLL 534
            LHRGLD RP+V RNDV P  M APQYRPRPANPDEIGNFID+NLKAAD DPTAPPYDSLL
Sbjct: 776  LHRGLDARPEVIRNDVAPPLMAAPQYRPRPANPDEIGNFIDENLKAADTDPTAPPYDSLL 835

Query: 535  VFDYEGGGSDAA--ASXXXXXXXXXXXXXXXXXXXXXXQETGDMYGGGE 675
            VFDYEGGGS+A   +S                      ++  ++YGGGE
Sbjct: 836  VFDYEGGGSEATSLSSLNSSASDQDQDYDYLNEWGNRFKKLAELYGGGE 884